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<div class="title">moltk::dp::AlignmentPosition&lt; SCORE_TYPE, GAP_NSEGS &gt; Struct Template Reference</div>  </div>
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<p>Represents one column/residue in a sequence/alignment to be aligned.  
 <a href="structmoltk_1_1dp_1_1AlignmentPosition.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="DPTable_8hpp_source.html">DPTable.hpp</a>&gt;</code></p>
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Inheritance diagram for moltk::dp::AlignmentPosition&lt; SCORE_TYPE, GAP_NSEGS &gt;:</div>
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<p><a href="structmoltk_1_1dp_1_1AlignmentPosition-members.html">List of all members.</a></p>
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<tr><td colspan="2"><h2><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="structmoltk_1_1dp_1_1GapScorer.html">GapScorer</a>&lt; SCORE_TYPE, GAP_NSEGS &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1AlignmentPosition.html#a14ca58fd97e01e3f63ec29e00759f0bc">gap_scorer</a></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1AlignmentPosition.html#af4f130fe325277b84f3c0a2034098bd9">index</a></td></tr>
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<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><h3>template&lt;typename SCORE_TYPE, int GAP_NSEGS&gt;<br/>
struct moltk::dp::AlignmentPosition&lt; SCORE_TYPE, GAP_NSEGS &gt;</h3>

<p>Represents one column/residue in a sequence/alignment to be aligned. </p>
<p>Optimized for fast scoring during alignment. Base class of <a class="el" href="structmoltk_1_1dp_1_1QueryPosition.html">QueryPosition</a> and <a class="el" href="structmoltk_1_1dp_1_1TargetPosition.html">TargetPosition</a> </p>
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template&lt;typename SCORE_TYPE, int GAP_NSEGS&gt; </div>
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          <td class="memname"><a class="el" href="structmoltk_1_1dp_1_1GapScorer.html">GapScorer</a>&lt;SCORE_TYPE, GAP_NSEGS&gt; <a class="el" href="structmoltk_1_1dp_1_1AlignmentPosition.html">moltk::dp::AlignmentPosition</a>&lt; SCORE_TYPE, GAP_NSEGS &gt;::<a class="el" href="structmoltk_1_1dp_1_1AlignmentPosition.html#a14ca58fd97e01e3f63ec29e00759f0bc">gap_scorer</a></td>
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template&lt;typename SCORE_TYPE, int GAP_NSEGS&gt; </div>
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          <td class="memname">size_t <a class="el" href="structmoltk_1_1dp_1_1AlignmentPosition.html">moltk::dp::AlignmentPosition</a>&lt; SCORE_TYPE, GAP_NSEGS &gt;::<a class="el" href="structmoltk_1_1dp_1_1AlignmentPosition.html#af4f130fe325277b84f3c0a2034098bd9">index</a></td>
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<hr/>The documentation for this struct was generated from the following file:<ul>
<li>moltk/<a class="el" href="DPTable_8hpp_source.html">DPTable.hpp</a></li>
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